Thursday, October 27, 2022

Iris Publishers-Open access Journal of Research & Reviews | Perception about Coughing Disease among University Students

 


Authored by Arslan Hassan*,

Synopsis

The objective of the present study was the perception of coughing among university students Coughing makes noise when sudden exhale of air done and virus brings up changes in neuron physiology which leads to sneezing and parasympathetically responses excretions in bronchi lead to coughing. Some symptoms are fever, chest painfulness, breathing difficulty. There are two types of sources exogenous and endogenous which leads to coughing. From the survey of university students mostly people said coughing is viral disease and almost all people suffer from coughing. As it is more common but it is not a genetic disease and not transmitted by any contact and blood transfusion among people. It can be cured by medicines and some said that for this disease there is no need for any treatment.

Keywords: Coughing; Neural alleyways; Neuron physiology

Introduction

Coughing is sudden exhale of air from lungs with making noise. In nasals airlines virus brought changes in neuron physiology primes to sneezing and parasympathetically response excretions whereas in bronchia which lead to coughing. There are mainly three types of coughing acute cough, subacute cough, and chronic coughing. From these three types mostly, acute type is found in people and lasts for maximum three weeks. This is caused by the viral infection other types may cause by bacteria also. Coughing always show irritating signs for patient and makes him lazy and sleepy all day. Some symptoms are fever, chest painfulness, breathing difficulty. In some cases, acute can change into chronic coughing where coughing and abnormal air passage feelings longs outlive than primary virus infection [1]. This proposes that few viruses have the ability to make insistent flexibility in the neural alleyways arbitrating coughing. This is typically notice that virus persuaded coughing that can continue fit out there the time desired for clearing of the virus infections. By changing the nervous system, respirational viruses thrive in escape but mostly leaves beyond hosts with extreme coughing respirational disease. Coughing may have different timing. It may morning cough or smoker cough, day coughing, night coughing and all-day long coughing. There may different types of sources some are exogenous some are endogenous which leads to inflammation, constriction, or compression of airways which resulted to cough [2,3].

The objective of the present study was the perception of coughing among university students.

Material and Methods

Method

As it was survey so no scientific method was available. For the perception and awareness of coughing we met with the university students and consented them whether they know about Coughing or not. Most of them students knew that coughing was viral disease and they told that coughing was one of common diseases and not spread through any contact or blood transfusion and we wrote on our list[4,5].Total 112 students participated in this study. All the students were of Bahauddin Zakariya University Multan, Pakistan [6,7].

Result and Discussions

(Figure 1- 4)

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Conclusion

We concluded from the present study that mostly people thought that coughing is a viral disease and almost all people go through this disease and they also know that it can be cured by medicines.

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Iris Publishers-Open access Journal of Archaeology & Anthropology| Digital Approaches to Historical Archaeology: Exploring the Geographies of 16th Century New Spain

 


Authored by Liceras-Garrido Raquel*,

Abstract

The humanities have always been concerned with ideas of space, place and time. However, in the past few years, and with the emergence of Digital Humanities and Computational Archaeology, researchers have started to apply an array of computational methods and geographical analysis tools in order to understand the role that space plays in the historical processes of human societies. As a result, historians and archaeologists, together with computer scientists, are currently developing digital approaches that can be used to address questions and solve problems regarding the geographies contained in documentary sources such as texts and historical maps. Digging into Early Colonial Mexico is an interdisciplinary project that applies a Data Science/Big Data approach to historical archaeology, focusing on the analysis of one of the most important historical sources of the 16th century in Latin America, called the Geographic Reports of New Spain. The purpose of this paper is to

a) describe the nature of the historical corpus,

b) introduce the methodologies and preliminary results produced so far by the project, and

c) explain some of the theoretical and technical challenges faced throughout the development of the methods and techniques that supported the analysis of the historical corpus.

Keywords: Historical archaeology; Digital humanities; Spatial humanities; New spain; Geographic information sciences; Machine learning; Natural language processing; Corpus linguistics; Geographical text analysis; FAIR data

Abbreviations: AI: Artificial Intelligence; CA: Collocation Analysis; CONABIO: Comisión Nacional para el Conocimiento y Uso de la Biodiversidad; CL: Corpus Linguistics; DECM: Digging into Early Colonial Mexico; ENAH: Escuela Nacional de Antropología e Historia; FAIR: Findable, Accessible, Interoperable, and Reusable Data; GISc: Geographic Information Sciences; GIS: Geographic Information Systems; GTA: Geographical Text Analysis; INAH: Instituto Nacional de Antropología Historia; INEGI: Instituto Nacional; de Estadística Geografía e Informatic; KML: Keyhole Markup Language; LOD: Linked Open Data; ML: Machine Learning; NER: Named Entity Recognition; NLP: Natural Language Processing; OCR: Optical Character Recognition; RGs: Relaciones Geográficas de Nueva España; UNAM: Universidad Nacional Autónoma de México

Introduction

During the last few decades, quantitative and computational approaches have become increasingly popular in the different disciplines within the Humanities. Archaeology is one of the pioneering fields where quantitative methods have been increasingly in development since the 1960s. Following the post-processual approaches of the 1980s, in the last 40 years, one of the most commonly used digital tools in Archaeology has been Geographic Information Systems. Despite its popularity, archaeologists have had to deal with the problems derived from applying GIS. Some of these issues, according to Huggett [1], include the difficulties in managing the category of time, and the apparent reductionism in the ways data is categorised and complexity handled, amongst others. Interdisciplinary approaches aim to tackle these issues, with the development of tools to create, recover, and store large amounts of data going together with the textual emphasis of the Digital Humanities [2-4]. In this paper, we focus on the geographical data that we can recover from historical sources (both textual and imagery), demonstrating that historical archaeologists can benefit greatly from the methodologies provided by this field.

Focusing on 16th century colonial sources, the ‘Digging into Early Colonial Mexico’ (DECM) project has three main and interconnected objectives. The first is the development and improvement of computational methods and tools that facilitate access to, management, and analysis of historical sources, whether textual or cartographic. To do this, we combine methods and techniques from four subdisciplines of Computer Science, including Machine Learning (ML), Natural Language Processing (NLP), Corpus Linguistics (CL), and Geographic Information Sciences (GISc). ML is a branch of Artificial Intelligence that gives computers the ability to learn. Whilst CL focuses on how language is expressed within a corpus, NLP delves into the development of computational models for the analysis of human languages. Finally, GISc, Geographic Information Systems (GIS), provides an environment to store, manipulate, visualise, and analyse spatial information. The second objective is the production of a range of digital datasets, derived from these historical sources, including:

i. a digital version of the RG corpus annotated with an interoperable taxonomy;

ii. a digital atlas containing the physical, political, religious, and administrative geographies of New Spain, at the beginning of the 16th century; and

iii. a digital platform that connects the spatial information contained in the atlas with the text and image contents (i.e. paintings) of the RGs.

Our third and final objective, based on the digital methods, tools, and resulting data, will answer research questions including, but not limited to: changes in settlement patterns between the Postclassic and Early Colonial period; progression and syncretism of Mesoamerican and Catholic cosmogonies; exploitation of resources and commercial networks; the role of indigenous and Spanish power institutions throughout the current territories of Mexico and Guatemala; and gender roles across class, societies, time and space. This paper is organised as follows: Section 5 describes the historical background of the colonial corpus of the Geographic Reports of New Spain (RGs). Section 6 explains the methods and techniques developed in this project and explains the potential of using digital technologies and approaches for public engagement through a case study. Finally, Section 7 provides the partial results and a discussion about the limitations that Corpus Linguistics and computational analysis techniques present, when applied to documents in ancient Spanish and indigenous languages, as opposed to the modern English sources that support most developments within the NLP field. Likewise, the difficulties that still represent a challenge for the project are also explained in Section 7.

The Corpus: Las Relaciones Geográficas de Nueva España

The Geographic Reports of New Spain (RGs) are a set of textual accounts and graphic spatial representations that were compiled during the reign of Emperor Charles V and concluded under the reign of his son, Philip II. These aimed to gather all the available information of the kingdoms and territories under Spanish rule, including Castile, Aragon, Italy, Netherlands, Portugal (after 1581) and the four American viceroyalties: New Spain (which included Mexico, Guatemala and the Philippines), Nueva Granada, Perú and Río de La Plata [5] (Figure 1).

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Our corpus of RGs consists of reports compiled following Royal Cosmographer Juan López de Velasco’s 1577 Instrucción y Memoria, which produced a more ordered series of reports than previous attempts [6,7]. The first reports to reach the Iberian Peninsula were those from Antequera (currently Oaxaca) and Yucatán between 1579 and 1581; later, those of the regions of Central Mexico, Michoacán, and Tlaxcala (1579-1582); and finally, those of Nueva Galicia (now Guadalajara) and Guatemala (1579-1585). The corpus includes a total of 2,800,000 words across 168 textual reports (26 of which are missing) in addition to 78 maps (16 of which are lost). These documents contain information on the 168 main cabeceras (town/district capital), the 248 subordinate cabeceras, around 414 towns, as well as smaller villages and farms [8]. Unfortunately, the spatial distribution is unequal, and according to H. Cline [9-10], lacking almost half of the existing civil jurisdictions in 1580. Despite this, we have 12 reports for Nueva Galicia, 17 for Michoacán, 34 for Mexico, 15 for Tlaxcala, 34 for Antequera, 54 for Tabasco and the Yucatán Peninsula, and 2 for Guatemala.

Composed of texts and pictorial maps, this corpus collects information primarily focused on the geography of New Spain, although it also includes rich data on the economy, religion, customs, and war activities of indigenous peoples a few years following the conquest. The corpus is, therefore, considered one of the most important sources of knowledge about the history of indigenous groups, as well as their relationships with colonial Spanish officials. Our project combines geospatial intelligence with the parsing of text, with the aim of facilitating the discovery of unsuspected data patterns and relationships among the entities mentioned in the collection of documents. The accumulation of information contained in this corpus has not been analysed jointly before, and can provide new interpretations of the social, spatial, economic, and ideological reconfigurations experienced by indigenous societies in the second half of the 16th century.

The original documents are mainly dispersed in four repositories: 80 reports are at the General Archive of the Indies (Seville, Spain); 46 at the Royal Academy of History (Madrid, Spain); 41 at the Latin American Collection of the Benson Library (University of Texas, USA) and 1 at the University of Glasgow (United Kingdom). The transcripts that form our corpus are the 54 RGs published by M. de la Garza [11] for Yucatán and Guatemala; the 114 RGs by R. Acuna [12] published in 10 volumes and ‘La Suma de la Vista de los Pueblos’, vol. 1 by F. del Paso and Trancosa [13], which provides additional information about the 16th century geographies. Alongside the texts, the corpus includes 78 maps preserved in the General Archive of the Indies (Seville, Spain), at the Royal Academy of History (Madrid, Spain), the University of Glasgow (Scotland), and the Benson Latin American Collection (University of Texas) [14]. The latest comprehensive analysis of these maps is thanks to Mundy [15]. Of these maps, 23 came from Mexico; 3 from Michoacan; 1 from Nueva Galicia; 21 from Oaxaca; 18 from Tlaxcala; 3 from Yucatan and 2 from Guatemala.

Our first task, therefore, was to obtain computer-readable files of the more comprehensive editions of the RGs. Thanks to the generosity of the National Autonomous University of Mexico (UNAM), we downloaded René Acuña’s 10 Relaciones Geográficas volumes [12], and Mercedes de la Garza’s Relaciones Históricogeográficas de la Gobernación de Yucatán [11]. To complement this, we also acquired Francisco del Paso y Troncoso´s Papeles de Nueva España in electronic format [13], though with significant errors. Consequently, this collection required pre-processing and reapplying of Optical Character Recognition (OCR), as well as manual identification and correction of electronic transcription errors.

Developing Computational Methods for Historical Archaeology

Creating a digital dataset of 16 th century geographies of new spain: The DECM Gazetteer

The Geographic Reports of New Spain are rich in geographic references, therefore this corpus has been at the core of much of the historical and archaeological research of this period in the past century. Nevertheless, as can be expected, these geographies have substantially changed over time, and it was not until the end of the 1960s that scholars such as Peter Gerhard and Howard Cline started to compile more detailed information about these. Although the works of these (and other) authors have been widely published, they are usually only available in printed format. Before attempting to carry out spatial analyses or to ask questions, it was necessary to not only to create a digital version of this information, but also to conduct further research, investigating many of the toponyms that were not included in existing atlases created by other scholars. This work consists specifically of the linguistic and geographic disambiguation of toponyms.

Based on the principles of FAIR (Findable, Accessible, Interoperable, and Reusable) Data and Linked Open Data (LOD), we are creating a digital directory, or gazetteer, that contains all the toponyms mentioned in the RGs related to settlements and geographic, political, or administrative features. To guarantee its interoperability with other systems and repositories, we have relied on the experience of previous projects such as the Alexandria Digital Library Gazetteer [16,17], or currently ongoing initiatives such as the World Historical Gazetteer. The well-established content standards from these projects offer the possibility to store and exchange not only geographic footprints (i.e. coordinates of latitude and longitude) of the place names, but also alternative spellings, the languages in which they are written, bibliographic references, and relationships, amongst others.

The first step in creating the gazetteer was to compile the information available of the 16th-century place names contained in the RGs. To do so, we digitised the toponymy indexes of the aforementioned RG editions: the 10 volumes of Acuña, the 2 volumes of De la Garza and the first volume of Del Paso and Troncoso. We standardised the indexes (as there was a considerable variety across all editions and volumes), and formatted them in plain text files, thereby ensuring they were in a computer-readable format. Due to name variations and inconsistencies, reconstructing 16thcentury toponymy poses many challenges. Although some place names have retained their original form, others have changed significantly over time as a result of linguistic evolution, including spelling variations, the use of Castilian transliterations of indigenous names, or the addition of words such as the name of a patron saint or a natural resource typical of the area (e.g. Ixtapan de la Sal). Further challenges are created by one place having different names in different languages (e.g. Santiago Mitlantongo, Mictlantongo or Mitlantongo in Spanish/Nahua, is Dzandaya or Sandaya in Mixtec), or one place name corresponding to several locations (e.g. Acatlán may refer to a pueblo in the state of Guerrero, an Alcaldía Mayor and cabecera in the state of Puebla, a cabecera in Veracruz, or any of its numerous other occurrences).

In order to resolve this, we carried out linguistic disambiguation of the place names. For this reason, we chose to reconstruct current toponymy as a starting point, using digital resources that were already available in GIS format, including:

I. The catalog of indigenous towns, produced by the Instituto Nacional de Estadística Geografía e Informática (INEGI) and the Comisión Nacional para el Conocimiento y Uso de la Biodiversidad (CONABIO) in 2010.

II. The geographic dataset created for the cartography of Mexico by INEGI, especially the toponym cartographic layers (scale 50k and 250k) and INEGI’s general toponym locations [18].

III. The GeoNames geographical database [19].

IV. The Getty Thesaurus of Geographic Names [20].

V. The place names database from the National Geospatial- Intelligence Agency (NGA) of the United States [21].

As research on Mexican toponymy has a long tradition, we also compiled and digitised comprehensive studies in historical geographies to fill the gap between modern and 16th century toponymies. Some of the most relevant have been Gerhard [22-24], Cline [10], Moreno Toscano [25], and Tanck de Estrada et al. [26]. These provide indexes of towns, geographic feature names, and civil and ecclesiastical divisions as they were referred to in both 16th century documents and modern equivalents. Additionally, we have also drawn upon the valuable resources created by the ‘HGIS de las Indias’ project [27], which provided the location of place names in 18th century Spanish America.

After compiling these spatial references, we began with the process of geographical disambiguation, assigning coordinates to each and every toponym mentioned in the RGs, when possible. To do this, we designed a two-stage methodology. First, through a semiautomatic approach for detecting and merging duplicate gazetteer entries, the 16th-century toponyms requiring disambiguation are matched against current toponymy and historical geographies. The result of these joins is reviewed manually to confirm or refute their accuracy. During this process, attributes are added manually to the geodatabase, such as the toponym type (city, town, mountain, river, etc.) based on a thesaurus, the coordinates confidence degree (1: definitive, 2: approximate), bibliographic references, and the relationships that place names share with other locations (‘depends on’, ‘near’, ‘contains’, etc.). The second stage focuses on those toponyms that cannot be disambiguated with this method, requiring a dedicated individual investigation process (Figure 2).

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Many of the toponyms that could not be disambiguated in the first stage correspond to localities that no longer exist as a consequence of the colonial resettlement processes that occurred during the 16th, 17th8, and 18th centuries. Others present orthographic variations that require consideration of linguistic normalisation of indigenous to Spanish orthography (e.g. Cuistlabaca, Cuestlaguaca and Coixtlahuaca). Homonyms and the complete modification of the toponyms are additional problems that need to be considered (e.g. Cintla or Zentla becoming Colonia Manuel González).

The methodology to disambiguate such problematic toponyms is based on the use of the digitised layers of the 16th-century provinces of New Spain contained in the work of Peter Gerhard [23]. The GIS shapefile (polygon) layer delimiting these regions was transformed into a KML (Keyhole Markup Language) format that allows the visualisation of geographic data in a chosen 3D environment which was, in this case, the Google Earth platform. Subsequently, the modern localities belonging to each of the historical provinces were extracted through geoprocessing using CONABIO’s layer. This new layer was also exported into the KML format for display in a geospatial interface. The next step was to identify the main cabeceras previously georeferenced, as well as historical information regarding the possible locations of problematic toponyms contained in Gerhard [23], Cline [10], Moreno Toscano [25], and numerous other geohistorical studies. In this way, it is possible to track, in most cases, the current location or the approximate coordinate that corresponds to the toponym in question. In addition, it was necessary to georeference other historical maps of the 16th century located in the General Archive of the Nation (Mexico) or in the General Archive of Indias (Seville, Spain), as well as to consult the Geonames database to assist the research process.

It is important to mention that the visualisation of layers of information in Google Earth or ArcMap is very useful given that, in some cases, corresponding places can be located a couple of kilometers outside the georeferenced polygon. This is because these polygons were obtained from the digitisation of the maps that Peter Gerhard published in 1972 [23] and do not, therefore, have precise limits. The construction of the gazetteer is an ongoing process and, thus far, we have been able to identify a total of 14,548 toponyms, including those from the RGs and secondary sources [23,25], with 73% disambiguated (Table 1).

Table 1: Geographic disambiguation process up to October 2019.

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Text mining: Geographical text analysis, Annotation, and machine learning

Another important aspect of the project has been the development and advancement of text mining approaches for the exploration of historical corpora. With the textual corpus digitised, we were able to begin the annotation process for the extraction and mining of concepts of our interest. Geographical Text Analysis (GTA) is a methodology originally developed by some members of our team. GTA is in essence a combination of theory and methods from Natural Language Processing, Corpus Linguistics, and GIS that facilitates the identification of unsuspected patterns of information by focusing on the geographic components of the historical narrative in large corpora [28-34]. In six stages, this analysis consists of:

I. Pre-processing the corpus to convert it into a machinereadable format. This involves digitising and/or transcribing the data, and cleaning any noise caused by the digitisation process.

II. Semi- or automatic identification of toponyms and other important information in the corpus, including all named entities (i.e. people, institutions, locations, etc.). To achieve this, a Natural Language Processing (NLP) task called Named Entity Recognition (NER) needs to be executed to extract proper names (i.e. toponyms, dates, institutions and people’s names). NER approaches can range in complexity, from methods based on rules and/ or dictionaries, to methods based on statistical models inferred through Machine Learning, or hybrid approaches combining these different methodologies.

III. Disambiguation of place names extracted in the previous stage. This involves resolving any linguistic and geographic uncertainties surrounding the place names in order to assign coordinates to the majority of sites mentioned in the corpus. The use of existing directories of place names, or the construction of a gazetteer connecting place names to geographic footprints, is essential to both this and the previous stage.

IV. Further annotation of the corpus, depending on predicted research questions and analyses. The annotations may refer to “part of speech” syntactic categories (i.e. noun, pronoun, adjective, determiner, verb, adverb, preposition, conjunction, and interjection), or they may refer to adhoc categories of terms (e.g. tagging information that refers to “deities”), created according to the research questions and managed through a tailored schema. This schema is later used to extract and cross-link information in each document or across the whole corpus. Following this stage, it is possible to carry out several data mining exercises and analyses. Two quick examples are:

a. extracting subsets of toponyms contained in the corpus.

b. creating thematic maps based on information from the corpus, linked to place names and geographic footprints.

V. Analysis of the data through an adapted form of Collocation Analysis (CA), a useful technique from Corpus Linguistics. CA allows extracting the most statistically significant words that are found next to a term or keyword of interest (the “collocates”, in CL jargon). The Geographical Text Analysis variant of the technique corresponds to the analysis of “Geographic Collocations”. This facilitates the recognition and retrieval, across the corpus, of all toponyms that collocate, or are close to, a keyword of interest according to a predefined proximity threshold (usually defined as the maximum number of words between the search-term and the collocate). In this manner, if a researcher is interested in investigating economic aspects related to agricultural products, s/he could locate, for example, all place names associated with the word “maize”.

VI. The datasets obtained in previous stages can be imported into a geodatabase for analysing the information in a GIS environment.

VII. This process facilitates the aggregation and analysis of information at a macro scale, which, in computer-assisted literary studies, is called “distant reading”. At the same time, the use of Geographic Collocation and the concept of “keywords-in-context” permit a more detailed granular comprehension of the corpus, by identifying those parts that deserve a “close reading”. This flexibility has been demonstrated in numerous research papers employing GTA [4,30,35,36] and opens an unprecedented range of possibilities in terms of identifying information patterns and hypothesis-testing across large corpora.

Although GTA offers considerable advantages in terms of answering historical questions in a way that would be impossible otherwise, it is quite limited by the capabilities of standard NER methodologies, as these only deal with recognising proper names and dates. Therefore, in order to expand the entities recognised by the computer, DECM is using a hybrid NLP approach that combines Machine Learning (ML) with dictionaries and rules. This work is being developed in collaboration with our industry partner tagtog, a company that has created a collaborative online text annotation platform.

When working with ML, challenges begin with collecting training data because, first, labeled datasets in this domain (i.e. documents written in the 16th century “classical” Spanish, mixed with phrases in different indigenous languages of the Americas) are scarce or non-existent; and, second, the increasing complexity and changing nature of linguistic nuances require knowledge and consistent verification from subject-matter experts. In the context of modern NLP approaches, this knowledge comes in the form of text annotations. Consequently, the first step was to tailor an ontology that encompassed the complexity of RGs, resulting in twenty-one entities or categories. These entities were defined and linked to DBpedia, a semantic standard, to ensure the interoperability of our dataset. Additionally, most entities contain labels, also defined and linked to DBpedia to enrich the semantic extraction process (see Table 2).

Once the ontology is defined, the main steps are to:

I. annotate a data sample through tagtog (Figure 3), augmenting the historical documents with information on the spans of text corresponding to entities of interest;

II. carry out an Inter-Annotator Agreement assessment for data sample quality, which measures the level of discrepancies between different annotators, enabling us to spot biases and ambiguous cases, and to evaluate the frequency of different class occurrences (to check for unbalanced class usage or oversampled data);

III. annotate a second data sample, facilitating the subsequent training of NER models to automatically recognise

entities, and also the creation of additional resources (e.g., dictionaries and rules) for the fine-tuned labels; IV. train the machine; and finally V. extract and mine the text.

Table 2: Annotation taxonomy: entities, DBpedia definitions and labels per entity.

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Currently, we are at the third stage, producing the annotation sample that will train the model. The tagtog annotation platform offers the possibility to upload dictionaries (pre-existing lists of toponyms, flora, political positions, institutions, etc.) to facilitate the classification of text according to the labels and entities in the ontology, facilitating the annotation process and enabling the human annotators to better focus on the problematic nouns. Simultaneous to advancing on this third stage, the data resulting from initial annotation efforts has also been used to support the training of a NER model based on neural networks, focusing on person and location names (i.e. we used the initial data to validate our ideas regarding the development of Stage 4, combining the indomain data with other pre-existing Spanish corpora containing annotations for named entities and parts-of-speech tags). Initial cross-validation tests showed that this NER model can produce high quality results (i.e. an F1 score of approximately 85% in terms of correctly identifying the spans corresponding to persons or locations), although further improvements are still planned (e.g. we plan to use parts-of-speech tags to latter help in the recognition of entities corresponding to common nouns). Once we have mined and extracted the information relevant to us from the text, we will proceed to connect this dataset with the gazetteer, which will enable us to work with this data in a GIS environment and to carry out spatial and statistical analyses.

Working with digital methods to analyse images: the maps (pinturas) of the RGs

One of the questions in the RGs requested that the recipient create “a plan in colour of the streets, plazas, and other significant features such as monasteries, as well as can be sketched easily on paper, indicating which part of the town faces south or north” [12]. Whilst some recipients chose to ignore this request, a considerable number ensured the creation of these maps and, as a result, a corpus of 78 maps has survived for the Mexico area. These maps are a unique reflection on 16th century settlements in Mexico, drawn using a combination of indigenous and European techniques and ideas. This interplay of indigenous and European voices is a key part of these maps’ significance, offering a unique insight into multiple perceptions of space and place during this crucial period in Mexico’s history. The importance of these maps is clear, and they have been the subject of numerous studies, which have provided invaluable contributions to our understandings of indigenous and European perceptions of space and place in 16th century Mexico [15].

The maps of the RGs contain a great variety of information, both textual and pictographic, which offer invaluable insight into the historical and geographical contexts in which these maps were produced. This information includes proper names in the form of both traditions, logographic Mesoamerican toponyms and people’s names, and European alphabetic glosses. Recent advances in digitisation techniques have allowed new ways of interacting with, and understanding, these valuable sources.

Digital annotation of maps is one method which offers a promising way of analysing a corpus, which is not heavily text-based, but may feature text alongside pictographic depictions of space and place. We have recently begun the process of annotating the maps of the Geographic Reports using Recogito, which has enabled us to investigate these maps in new and innovative ways. The tool developed by Pelagios Commons [38] allows us to identify, record and export places and other information depicted in the maps through a Linked Open Data model. With the support of a Pelagios Commons Resource Development Grant, we were able to develop the project Subaltern Recogito: Annotating the sixteenth-century maps of the Geographic Reports of New Spain. In collaboration with our colleagues in the LLILAS Benson Latin American Studies and Collections at The University of Texas at Austin, the National School of Anthropology and History (ENAH), The National Autonomous University of Mexico (UNAM), the National Institute of Anthropology and History (INAH), and the University of Lisbon, we delivered an online workshop and trained 27 scholars from UNAM and ENAH to complete the annotation of the full corpus of the maps.

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The annotation of both elements, this is to say, the logographic toponyms, and names alongside alphabetic descriptions and place names (Figure 4), is enabling us to better understand the different ways in which Mesoamerican indigenous spatial knowledge and portrayals changed over time, and the processes through which these became ‘subaltern’ to European thinking. When possible, each toponym was assigned to its corresponding modern geospatial coordinates in the Recogito platform (Figure 5). The collectively annotated information produced from this workshop will be available at the end of the project to any scholar with a CCBY licence, and it will be also deposited at the Nettie Lee Benson Latin American Collection at the University of Texas as an enhanced dataset and published in their data repository dedicated to the RGs: https://dataverse.tdl.org/dataverse/relaciones_geograficas. It is our aim that the resulting dataset can also support the development of automated approaches (e.g., computer vision methods leveraging advances in machine learning) for annotating the considered information elements on other similar maps.

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Mesoamerican Pathways: a public engagement online resource

DECM is also committed to the idea that digital public engagement is an effective way to communicate research results directly to non-specialists, and to reach a wide range of public. With this in mind, and using the resources already created for the gazetteer, we have also developed the impact project ‘Pathways to understanding 16th-century Mesoamerican geographies’. This resulted in the creation and publication of three ArcGIS StoryMaps with two primary objectives: first, to disseminate the content of our research targeting non-academic public and, secondly, to create an online, interactive tool for teaching.

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StoryMaps are teaching/dissemination devices that enable the narration of any kind of story based around geographic information, particularly maps. The easy identification of locations, main characters and episodes, alongside its interactive, visual nature make this tool the perfect medium to present historical narratives. ESRI’s ArcGIS StoryMaps offers a dynamic storytelling environment to combine textual narratives, current and historical maps, and images. Focused on the Mesoamerican Postclassical and Colonial period of Central Mexico, covering a period from the 14th to the mid-16th century, the StoryMaps are divided into three themes: History, Toponymy and Geography (Figure 6).

Mesoamerican pathways | A history of Mexico: The first and largest of the StoryMaps explores the history of the Mexica people, beginning with their journey to the foundation of Tenochtitlan in 1325, which would become (alongside its neighbour city to the north, Tlatelolco), the heart of the Triple Alliance. Following this, it shows how the Mexica began to expand, featuring the lists of conquered settlements as recorded in the Codex Mendoza. This leads up to the arrival of the Spanish, and the ultimate meeting of Moctezuma II and Hernán Cortés in 1519. It then proceeds to describe how Cortés, with considerable assistance from his indigenous allies, conquered Tenochtitlan. This Story Map concludes with a look at the beginning of the colonial era, exploring how the Spanish began to impose their own institutions across ‘New Spain’, with varying success due to the continuing influence of indigenous institutions across Mesoamerica.

Mesoamerican pathways | Tracing toponymy: This Story Map explores the nature of historic place-names across what is currently Mexico, introducing the importance of place-names and language as a tool of colonisation and empire. It explores how this tool was used not only by the Spanish, but also by the Mexica and the Triple Alliance (not to mention other indigenous groups), as part of their systematic colonisation of conquered settlements and people. The Story Map goes on to explore how indigenous placenames continued to be used, despite the processes of colonisation at the hands of both the Triple Alliance and the Spanish. In addition, it explores the meaning of Nahua toponymy in particular – demonstrating the use of suffixes such as -tepec (which means ‘inhabited place’) and showing the distribution of some of these examples. Following this are some case studies of individual placenames, explaining their meaning and how they have been depicted in the historical record. The Story Map concludes by giving a brief overview of colonial naming, and how indigenous influences have continued.

Mesoamerican Pathways | Depicting Geographies: The third and final StoryMap discusses depictions of geographic space and place. This starts with an explanation of why this is an important discussion, with particular reference to, and problematisation of, the use of Geographic Information Systems for representing historical geographies. Following this, it introduces the idea of representations of space that may be unfamiliar to the modern reader and explores the various types of pre-Hispanic Nahuatl documents, including those which represented geographies. The StoryMap gives an introduction to the state of Spanish cartography in the 16th century, before going on to discuss how the Spanish and Nahua traditions of depicting geography began to merge during the conquest of Mexico. There is considerable evidence of this merging of traditions throughout the historical record, which is explained in the StoryMap alongside two specific examples.

Concluding Remarks

Given the complexity of historical data and the technical development in Digital Humanities thus far, DECM is addressing several challenges in all the disciplines involved. Starting with the analysis of text, the fact that the corpus is multilingual, written in the 16th century Spanish, and peppered with words in 69 indigenous languages, is pushing Corpus Linguistics (CL), Natural Language Processing (NLP) and Machine Learning (ML) beyond their current limits, which are based upon, and restricted by, tests which use predominantly modern texts written in English.

Additionally, since the RGs are responses to a questionnaire, the topics discussed are multiple and diverse, and consequently the annotation ontology contains a large number of entities and labels. In the same vein, the majority of our annotations are nouns. While the identification of proper nouns is well tested in NER, the automated classification of words beyond these is more problematic. Therefore, to improve the results when the computer automatically assigns entities and labels, we are using a hybrid approach that combines the use of rules and dictionaries, with statistical models with parameters inferred through Machine Learning (ML). Research in Mexico has produced a large number of dictionaries focused on a variety of topics, including toponyms, flora, political positions, institutions, etc. The tagtog annotation platform offers the possibility to upload dictionaries to labels and entities to facilitate the classification of text, enabling the sorting of diverse topics and problematic nouns. At present, ML is being considered to support the recognition of entities corresponding to proper nouns (e.g., persons and locations) but, beyond this, we also plan to experiment with Machine Learning approaches for more ambiguous entities and labels where classification is difficult using dictionaries, such as cosmogony, activities, cultural artefacts, or events.

Working with 16th century sources means constant spelling variations and ambiguity. There is a lack of standardisation in the spelling of people’s names and places, in addition to the forms of naming ethnic groups, social classes, regional titles, plants, animals or local artifacts, amongst others. This has the potential to hamper the expandability of the gazetteer (as capacity for these alternative or additional words must be built-in to the database), as well as complicating the text mining and Machine Learning processes. The challenges posed by semantic and geographic ambiguity are present in all project stages and research areas. In the case of a place name corresponding to several locations, the geographic disambiguation process necessarily includes a stage for close, dedicated research. When training the computer for the automatic identification of information using Machine Learning, one of the challenges that we are experiencing is that the same word can have several meanings. For instance, the word ‘vino’ could be a conjugation of the verb ‘to come’ (s/he/it comes) or the noun ‘wine‘, depending on the context. The creation of a wide and diverse set of training data, or the use of NLP techniques to recognise the ‘parts of speech’, can both contribute to the differentiation and classification of particular word types.

Regarding the spatial depictions of the RGs maps, we have been able to assign geographical coordinates to many of the logographic toponyms and place names written in European glosses that appear in these pinturas, using tools including Recogito. The geolocation of these places is, however, a minute aspect of the information contained within these maps. There are other elements such as orographic features, pathways, religious symbols and persons that together construct a semantic riddle that contributes to the interpretation of the spatial logic of the map [39]. The possibility to include this data may reveal new patterns in the construction of space, offering insight into indigenous conceptions of the surrounding world. We also aim to develop new kinds of research questions that complement and build upon the perspectives of established theories and interpretations of indigenous history.

With the advancements of the Digital Humanities, we hope that initiatives such as the DECM project encourage historical archaeologists to consider the different types of spatial data that can enrich research, developing its potential in the social sciences and humanities by establishing new research methodologies. In our commitment to FAIR data, at the end of the project in January 2021, all datasets will be published openly in Lancaster University, Lisbon University and INAH repositories.

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Wednesday, October 26, 2022

Iris Publishers-Open access Journal of Ophthalmology & Vision Research | Superior Ophthalmic Vein Thrombosis Presenting with Headaches and Diplopia

 


Authored by Maryam Naser MD*,

Abstract

Superior ophthalmic vein thrombosis (SOVT) is an extremely rare orbital pathology which is usually associated with orbital inflammation and infection, hypercoagulable states, autoimmune conditions, tumor compression, carotid cavernous fistula (CCF), vascular malformation and trauma [1-4]. Clinical findings include sudden onset of painful proptosis, ophthalmoplegia, chemosis and visual disturbance. SOVT can be life threatening due to risk of cavernous sinus thrombosis. Early diagnosis is important and appropriate management based on the underlying causative factors is essential to prevent complications like vision loss [5]. We present a case of superior ophthalmic vein thrombosis of the right eye.

Keywords:Cavernous sinus thrombosis; Proptosis; Superior ophthalmic vein thrombosis

Case Presentation

A 68-year-old white female with past medical history of coronary artery disease, myocardial infraction, aneurysm clipping, cholecystectomy, myasthenia gravis, migraine and anxiety presented with worsening of headache. The patient complained of increased in intensity of her headaches to 10 out of 10. The pain was throbbing, intermittent and localized behind right eye. Headaches was associated with photophobia and intermittent diplopia. MRI brain and orbit showed possible venous thrombosis. MRA verified thrombosis in right superior ophthalmic vein. The medications she used to take at home were Lasix 40 mg, nitroglycerin 0.4 mg sublingual PRN, Ativan 1 mg TID. On review of system, there was no history of fever or chills change in appetite, hearing change or ear discharge, sinus disease. Vitals were normal except for HR of 108.

On physical examination, pupils were equal and reactive to light (4 mm in dark, 2 mm in light). Extra ocular movements were intact. She had binocular diplopia and proptosis of right eye. Rest of the neurological exam was normal. Hematological workup was negative for hypercoagulability state. The patient was started on heparin per stroke protocol with recommendation of discharging on Coumadin. Gradual resolution of symptoms was noted after 4 day (Figure 1 & 2).

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Discussion

Superior Ophthalmic Vein Thrombosis (SOVT) is a rare entity characterized by rapidly progressive symptoms including ophthalmoplegia, periorbital edema and proptosis due to blockage of venous drainage from the orbit [3,6]. In a retrospective case series of three patients with confirmed SOVT, all patients presented with unilateral, painful proptosis noted upon awakening [3]. Although the etiology of SOVT is multifactorial, usual factors include coagulation disorders, vascular and Sino orbital disease. The most common cause of SOVT is orbital infection, as in the case of orbital cellulitis [7]. Other etiologies including vascular malformations, thyroid associated orbitopathy, and sarcoidosis also have been reported.

SOVT may be challenging to differentiate between orbital cellulitis, because of the overlap of symptoms and similar clinical presentation [8]. In SOVT, fundoscopic examination is normal [1]. The exact pathogenesis of SOVT is unknown, however systemic infection may lead to a procoagulant response. Paranasal sinusitis may lead to congestion of SOV and ultimately thrombus formation. Diagnosis by imaging modalities may be challenging. Enhanced CT shows dilation of SOV accompanied by peripheral enhancement and central hypo intensity [8].

However, it may not reveal early thrombosis or early cavernous sinus thrombosis. Due to these reasons, authors believe that MRI is a more sensitive and specific tool [1]. MRI and MRV can confirm the diagnosis of SOVT and exclude other mimicking disorders such as cavernous sinus thrombosis and Sino-orbital infection [3]. The absence of expected signal void in the SOV is a sign of thrombosis [9]. A case review pointed to three reported cases of SOVT with restricted diffusion, reflecting the presence of an intraventricular clot [6]. On cerebral angiography, SOVT is demonstrated by thickening of the vessel lumen [1]. Treatment is guided by consideration of severity of findings. Anticoagulation is controversial and should be considered after risk and benefit analysis [3]. Early detection of SOVT is important in avoiding cavernous sinus thrombosis [9]. In patients with ophthalmoplegia and periorbital edema, the diagnosis of SOVT should be considered to prevent potentially serious complications.

Conclusion

SOVT is an early sign of impending cavernous sinus thrombosis which could be life threatening. Anticoagulants may be considered in such patients. A multidisciplinary approach with the treating physician, neurologist, radiologist and ophthalmologist is suggested when managing a case of orbital vein thrombosis. Risk factors for spontaneous superior ophthalmic vein thrombosis are multifactorial. MRI and MRV is the imaging modality of choice for confirming SOVT and can help to exclude other disorders which may mimic the condition.

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Iris Publishers-Open access Journal of Biology & Life Sciences | Climate Change and its Impact on the Agricultural Sector

  Authored by  Zakaria Fouad Fawzy*, Abstract The agricultural sector is one of the sectors that will be negatively affected by this phenome...