Authored by Ayodele A Otaiku*,
Abstract
Cassava crop cultivation microbiome impacts by microbial biofertilizer is an integral function of the agro-ecology, its evolution (yield, soil health and quality) for sustainable agriculture. Increased yield and nutrient bioavailability powered by co-inoculation of microbial consortia adaptability to the soil ecology. Biofertilizer solves the traceability problem of chemical farm inputs, suitability and nutrient use efficiency as an integral function of the rhizosphere microbiome ‘tailor’ integrated soil fertility management that improves micronutrient and macronutrient via plant microbe interactions for soil health quality and crop degradation management.Mycorrhizal spp mutualistic symbiosis with plant roots satisfies the crop nutrients requirements. Aspergillus spp, Bacillus spp and Clostridium spp in the biofertilizer enhances potassium solubilization, a major challenge in cassava crop nutrition development of the biomass and mineralization. Soil organic matter improvement as a function of biofertilizer application help management of carbon sequestration and climate vulnerabilities.
Keywords: Biofertilizer; Plant microbe interactions; Sustainable Food systems; Soil fertility; Climate change; Crop nutrient efficiency; Rhizosphere; Soil health and quality; Cassava (manihot esculenta crantz)
Introduction
Cassava cultivation constraints
Many diseases are caused by pathogens, whose damage symptoms appear on the leaves, stems and storage roots [1] during cassava cultivation. The common diseases of cassava are cassava mosaic disease, cassava bacterial blight, cassava anthracnose disease, cassava bud necrosis and root rot. Some of these diseases attack the leaves and stems of cassava plants while others attack the storage roots [2]. Cassava mosaic disease is caused by the African cassava mosaic virus which occurs inside the leaves and stems and causes yield reductions of up to 90 percent [3]. Economical damage by diseases, pests and weeds of cassava is relatively moderate, although white flies can be a menace in some regions, if the problem is not identified early, and remedial action not implemented in a timely manner (Figure 1). Correct identification of the pest and an understanding of its behaviour, including its most vulnerable stages would provide insights into its management affects crops yield and development. Care must be then taken if pesticide application is contemplated, since there is the likelihood of high residual levels remaining in the product after harvest if an inappropriate formulation is not used.
Biopesticides can exert fungicidal, insecticidal, or nematocidal action via the microbial inoculate in the biofertilizer, a combination of them and possibly other auxiliary functions such as bird and mammal repellents or herbicides. According to recent classifications [4,5]. Bio-control action is due to multiple synergic mechanisms, generally including: i) production of antibiotics and other secondary metabolites (e.g., phenazines by Pseudomonas spp., lipopeptides by Bacillus spp., and hydrocyanic acid by Rhizobia); and ii) secretion of lytic and defense enzymes (e.g., chitinases, glucanases, peroxidases, polyphenol oxidases, and phenylalanine ammonia lyases produced by Trichoderma, Fusarium, Rhizoctonia, Serratia, Streptomyces and Bacillus strains) [6,7]. The drawback of using living microorganisms is that their efficacy is often unpredictable under changing field conditions, and their fitness is reduced by the presence of an indigenous microbiota difficult to displace by non-native microorganisms [7,8]. Additionally, the antagonistic interactions occurring in formulations containing more than one microbial species limit their potential in integrated pest management strategies [9,10].
Biofertilizer formulation
Table 1: Categorization of general goals for agro-ecosystems.
A key advantage of beneficial microorganisms is to assimilate phosphorus for their own requirement, which in turn available as its soluble form in sufficient quantities in soil. Pseudomonas, Bacillus, Micrococcus, Flavobacterium, Fusarium, Sclerotium, Aspergillus and Penicillium have been reported to be active in the solubilisation process [11]. A phosphate-solubilizing bacterial strain Micrococcus sp. has polyvalent properties including phosphate solubilization and siderophore production [12]. Similarly, two fungi Aspergillus fumigatus and A. Niger were isolated from decaying cassava peels were found to convert cassava wastes by the semi-solid fermentation technique to phosphate biofertilizers [13]. Aspergillus, Bacillus and Clostridium are found to be efficient in potassium solubilization in the soil and mobilize in different crops [14]. Mycorrhizal mutualistic symbiosis with plant roots (Figure 2) satisfies the plant nutrients demand [15] which leads to enhance plant growth and development and protect plants from pathogens attack and environmental stress [16]. Pseudomonas aeruginosa has been shown to withstand biotic and abiotic stresses [17]. Paul & Nair [18] found that P. fluorescens MSP-393 produces osmolytes and salt-stress induced proteins that overcome the negative effects of salt. Microbial inoculants genera in the OBD-Biofertilizer are isolated using the growth media in Table 1 from different agro biowaste and inoculated into the composted biofertilizer.
Climate change and soil biological health
It is commonly observed that applying only N or N + P can lead to a decline in particulate organic matter (>53 m fraction) and soil biological activity (soil respiration, microbial biomass C and N). These however improved significantly by moving towards balanced application through the addition of NPK or NPK+ organics [19]. Also, actual field studies on microbial diversity and activity are few. Contrary to a hypothesis that leaf litter produced under elevated CO2 and having a high C: N ratio would be difficult to decompose, the microorganisms were found to adapt to changing soil carbon input under elevated CO2 and there was no effect on their turnover and behaviour [20]. Expectedly, under 15 elevated CO2, increased immobilization of fertilizer N by stimulation of mineralization (SMB) of soil organic matter (SOM) nitrogen was observed [21].
Thus, greater microbial demand for N (>27%) was observed under elevated CO2 [22]. As warmer temperatures are maintained, the less efficient use of carbon by the microbes causes them to decrease in number, eventually resulting in less carbon dioxide being emitted into the atmosphere [23] via an agricultural soil vis-à-vis a desert soil (warmed in real world over time) attests this reality. Mycorrhizal and N2-fixing relationships are generally enhanced by CO2 enrichment, but effects of warming are highly variable [24]. There are reports proving that soil resistance and resilience is linked to soil biodiversity [25] and ‘higher’ soil diversity protects the soil against ecosystem malfunctions under stress or disturbance: an ‘insurance hypothesis’ linked to soil biodiversity [26].
Unfortunately, some African soils lack essential nutrients. In Uganda, Kenya and Tanzania low yield of crops was attributed mainly to poor soil fertility [27]. For instance, Zn is deficient in most West African soils, especially the lowland areas [28] while plant viable P is unavailable in the iron-rich tropical soils of Africa due to low pH and high level of iron and aluminum oxides [29]. The soil lacks Ca, Mg and K, and when acidic, has a high level of free Mn, which is toxic to crops. Buhmann, et al. [30], some South African soils are deficient in K and P, making it unsuitable for cultivation. Africa has lower fertilizer consumption when compared to other regions of the world. In 2002, sub-Saharan Africa had about 8 kg/ha of fertilizer consumption which increased to 12 kg/ ha in 2010 and 18 kg/ha in 2013 (Sommer et al., 2013). This is far below that of other regions of the world such as North America, South Asia, and East Asia and Pacific which were estimated at 127.9 kg/ha, 151.8 and 337.0 kg/ha respectively (World Bank Fertiliser Consumption, 2013).
Sub-Saharan Africa fertilizer market lacks basic infrastructure for sustainability, efficient pricing and competition (Sommer et al., 2013). Biofertilizers should not be misunderstood for organic fertilizers such as compost, animal manure and plant manure or extracts [31,32]. However, whether the beneficial microbes improve crop accessibility to nutrients [6,33] or replenish soil nutrients (Shridhar, 2012; Thamer et al., 2011), if the overall nutrient condition of crop and soil has been improved, such substances containing the beneficial microorganisms are considered as biofertilizers [32]. The objectives are:
• How biofertilizer functional architecture links system design (microbial inoculant) impacts on the cassava crops nutrient use efficiency.
• To use the outcome indicators (crop yield, soil organic matter) as a determinant of soil health and quality and soil nutrient facility management.
• How the microbial inoculant impacts on the integrated soil management?
• What are the indicators of soil quality?
Methodology
Biofertilizer functional models - soil health and quality
The environment-centric view (biofertilizer impacts) considers function as its effects (biofertilizer). The device-centric view considers function in term of internal parameters of the object (cassava crop physiology). The device-centric functions are the outcome (yield, soil health and quality) of the deployment of the environment centric functions. Eppinger and Browning, 2012 define. Underrating the biofertilizer system architecture of cassava crop cultivation within the agro-ecology, their relationships to crop development, evolution and outcome (yield, soil health and quality). Models are representations of the current understanding of a phenomenon or process of interest [34,35]. Functional models describe the relationship among variables using the simplest description of causal relations possible that still provides a useful description of the process or phenomenon [36]. A functional model would describe the components of the biofertilizer system and how they interact soils and crops cultivation. A mechanistic model would describe the properties of the biofertilizer contained in the components of the soil systems during cultivation. Information is also required on the driving forces that impact the variables controlling outcomes This driving force-outcome-response framework (or pressure-state- response framework) is widely used in environmental assessment [37].
Indicator
Biofertilizer is dependent variable is the variable being tested and measured in the cassava (independent variable or manipulated variable) field experiment. The independent variable (cassava crop) effect on the dependent variable is observed and recorded. Indicators can be used to communicate information on driving forces, outcomes, or responses. Driving force indicators communicate information on the causes of a problem, which may provide incentives for appropriate responses or be used to monitor the efficacy of responses. Outcome indicators communicate information on the effects of a problem on a goal. Outcome indicators are often slow to respond but are directly related to the issue and are useful for assessment and planning. Response indicators communicate information on the extent to which remedial actions are implemented. Response indicators respond quickly, but their effects are not evident until much later. Indicators may communicate information on level, change or structure [38]. An indicator of structure provides information on industry or policy structures related to driving force (e.g., average farm size) or response (e.g., proportion of farms with an environmental farm plan). Water quality: watersheds with the greatest risk of non-point pollution are identified based on leaching and runoff vulnerability indices calculated for pesticides and nutrients (Figure 3).
For example, vulnerability indices for nutrients are obtained from estimates of excess nutrient levels (manure or commercial fertilizer sources) combined with estimates of leaching (based on precipitation and hydrologic factors) or estimates of run-off, Figure 2 reported by Kellogg et al. [39]. In the United States to develop soil ratings based on measured soil properties for the comparison of land management systems [40] and the approach, soil quality is considered an inherent property of the soil that can be determined from measurable soil attributes [41]. When a soil quality parameter declines below an acceptable limit, an appropriate response is required to increase soil quality. Acceptable limits depend on land use, soil characteristics, landform and climatic conditions. Many potential parameters of soil quality, measurable at various scales of assessment, have been proposed (Table 1). Wander & Bollero [42] concluded that particulate organic matter, mean wet weight diameter of aggregates, bulk density and penetration resistance may be good indicators of soil quality because they are sensitive to management and environmentally relevant.
Acton & Gregorich [43] defined soil quality as “the soil’s fitness to support crop growth without resulting in soil degradation or otherwise harming the environment”. Larson & Pierce [41] stated that “soil quality describes how effectively soils: 1) accept, hold, and release nutrients and other chemical constituents; 2) accept, hold, and release water to plants, streams and groundwater; 3) promote and sustain root growth; 4) maintain suitable biotic habitat; and 5) respond to management and resist degradation”. Karlen et al. [44] defined soil quality as “the capacity of a specific kind of soil to function, within natural or managed ecosystem boundaries, to sustain plant and animal productivity, maintain or enhance water and air quality, and support human health and habitation”.
Soil quality and health
Soil quality can be defined as the fitness of a specific kind of soil, to function within its capacity and within natural or managed ecosystem boundaries, to sustain plant and animal productivity, maintain or enhance water and air quality, and support human health and habitation [45]. Soil quality is related to soil functions and soil health concepts views soil as a finite and dynamic living resource [46]. Plant health is clearly a component of soil health but necessarily not of soil quality [47]. Baker & Cook [48] described the soils in which disease severity or incidence remains low, in spite of the presence of a pathogen, a susceptible host plant and climatic conditions favorable for disease development, as suppressive soils. Soil biota like arbuscular mycorrhizal fungi play a significant role in improving plant nutrition but also act as bioprotectants against pathogens and toxic substances [49]. Thus, there is a considerable degree of overlap in the meaning of soil quality and soil health (Doran, 2002), though soil health perceptions tend to focus more on biotic components of soil [50]. Soil degradation or deterioration in soil health or quality implies loss of the vital functions of soil: (i) providing physical support, water and essential nutrients required for growth of terrestrial plants; (ii) regulation of the flow of water in the environment and (iii) elimination of the harmful effects of contaminants by means of physical, chemical and biological processes, i.e., environmental buffer or filter [38,51]. The quality and health of soil determine agricultural sustainability and environmental quality, which jointly determine plant, animal and human health [21,52].
Results and Discussion
Biofertilizer - mechanism of action
The absence of a population of degrading microorganisms can be overcome by the inoculation of the plant rhizosphere with pollutant degrading strains and biosurfactants during crop cultivation via biofertilizer. This approach successful in reducing the levels of benzene, ethylene, toluene xylenes, hydrocarbons, polychlorinated biphenyls and pesticides in polluted environments [50,53] especially in Africa poor soil profile. The rhizosphere is defined as the volume of the soil over which roots have influence, and which is shared with soil bacteria. Plants release exudates in the rhizosphere likely to serve as carbon source for microbes [54]. Consequently, rhizosphere microbes can promote plant health by stimulating root growth via production of plant growth regulators, enhance mineral and water uptake. Some bacteria, especially fluorescent pseudomonads, produce siderophores that have very high affinities for iron as compared to fungal siderophores [55] and can sequester this limited resource from other microflora thereby preventing their growth [56].
Earlier reports have demonstrated the importance of P. fluorescens siderophores in disease suppression [57,58], Figure 4. However, many endophytic bacteria are facultative plant colonizers and have to compete well in the rhizosphere before entering the plant [59] and might be therefore equipped with a rich arsenal of metabolites involved in defense as well as in interaction with the plant. Many bacteria with the capacity of colonizing plants utilize the nutrient niche of root surfaces in the rhizosphere and most of them might even actively switch from root surface to endophytic lifestyles [59,60]. These bacteria comprise several well characterized species of Bacillus and Pseudomonas and a number of metabolites, particularly lipopeptides synthesized by non-ribosomal peptide synthesases, have been described to be important for rhizosphere bacteria for antibiosis and for inducing plant defense mechanisms (Figure 5). Biofertilizer characteristics (Table 2) and biosurfactants (Table 3) applied in the filed cassava cultivation requires no chemical pesticide. This was as a result of might be cassava plant-associated lifestyle requires adaptation to several niches, in which different metabolites act as signals for interaction (communication) with the plant and host specific plants nutrient and crop protection.
Table 2: Biofertilizer characteristic as integrated nutrient management during crop cultivation with references.
Rhizobium and Bacillus were found to synthesize indole acetic acid (IAA) at different cultural conditions such as pH, temperature and in the presence of agro waste as substrate [61]. Ethylene, unlike other phyto-hormones, is responsible for the inhibition of growth of dicot plants [62]. It was found by Glick et al. [20] that PGPR could enhance the growth of plant by suppressing the expression of ethylene. Interestingly, a model was suggested in which it was shown that ethylene synthesis from 1-aminocyclopropane-1- carboxylate (ACC), an immediate precursor of ethylene, which is hydrolyzed by bacterial ACC- deaminase enzyme in the need of nitrogen and carbon source is also one of the mechanisms of induction of conditions suitable for growth, Figure 5. For plantassociated microorganisms introduced as bio-control agents into the rhizosphere or phyllosphere, the population of the microbial bio-control agent declines to background levels when the supporting plant dies, and it must be applied again with the next planting of that crop with the graphic narrative, Figure 5.
Increased yield and nutrient availability
The use of biofertilizers leads to separate accumulation of N, P and K in the soil, thereby maintaining soil nutrient balance [33,63]. Micronutrients (Zn, Fe, Mn, Cu and Mo) form insoluble complexes in the soil, which are not readily accessible by crops. Mahdi et al. [64], 75% of applied Zn forms insoluble complexes while plants use only about 1- 4% of total available Zn in the soil. However, Rhizobium, Bradyrhizobium, Pseudomonas, Thiobacillus, Saccharomyces, Penicillum and Bacillus can improve the uptake and availability of micronutrients in the soil [31,65]. In Fe immobilized soils, for example, bacteria siderophores solubilize and chelate Fe into complexes that can be easily absorbed by the plant roots [66]. Trichoderma harzianum, a fungal specie, can solubilize minerals such as metallic Zn and Mn0 by chelating and reducing mechanisms [67]. Vesicular Arbuscular Mycorrhiza (VAM) are also able to solubilize Zn, Fe, Mn, and Cu in agricultural soil [68,69]. This biofertilizer is important in areas experiencing high rate of potassium loss found in West Africa (Nigeria and Guinea Bissau) and East Africa (Burundi, Malawi, Kenya, Swaziland, Uganda and Rwanda) [70]. Another technique used by most plants to arrest P limiting situation is the plant-fungi symbiotic relationship (ectomycorrhiza and endomycorrhiza).
Plants develop increased root growth by the extension of the existing root systems through mycorrhizal association or hormonal stimulation (phyto-stimulation) effect [24]. Here, fungi hyphae are able to mobilize and make P available to the plants [6]. The arbuscular mycorrhizal fungi (AMF) increase its exploitation of soil nutrients through specialized structures known as vesicles and arbuscules [71]. In addition, P is mobilized through the changes in sorption balance of soil solution caused by microbial biomass turnover in the rhizosphere. This leads to an increased mobility and uptake of organic P or orthophosphate ions [72]. Though some estimates on critical levels of soil organic matter (SOC) are available (e.g., Greenland et al. (1975)) considered 2% of SOC as the minimum requirement for maintenance of satisfactory soil aggregate stability and above which no further increases in productivity are achieve [21], the quantitative basis for such thresholds is limited (Loveland and Webb, 2003). Prasad et al. (2003), with particular reference to the Indian agriculture, considered soils with organic carbon (%) values < 0.5 as low fertility soils, 0.5 to 0.75 as medium fertility soils and >0.75 as high fertility soils. Magdoff (1998) reported potential crop yield increases of 12% for every 1% of soil organic matter based on his studies in USA. Soil quality indices are decision tools that effectively combine a variety of information for multi-objective decision making [73].
Enzymes as indicators of organic matter quality and microbial activity
Soil enzyme assays generally provide a measure of the potential activity, i.e., that encoded in the genotype, but this will rarely be ever expressed. Further, there are at least 500 enzymes and one has decided as to which enzymes would be the best indicators for soil quality [74], Table 4. Three enzymes viz., chitinase, phenol oxidase and phosphomonoesterase, as a group reflect relative importance of bacterial and fungi, as well as the nature of organic matter complex [75]. Phenol oxidase is produced primarily by white rot fungi, and is specific for highly recalcitrant organic matter, such as lignin [76]. Chitinase is a bacterial enzyme which converts chitin, a substance intermediate in its resistance to microbial metabolism produced by fungi and arthropods, into carbohydrates and inorganic nitrogen [77]. Phosphomonoesterase (acid phosphatase) activity is often correlated with microbial biomass [78,79], fungal hyphal length [58] and nitrogen mineralization [80]. Soil quality indicators would be useful to farmers and planners only if we know their critical limits, i.e., the desirable range of values of a given indicator that must be maintained for normal functioning of the soil.
Microorganisms affecting stress tolerance
Bacteria with the potential to act as bio stimulants (Table 3) have been isolated from a number of ecosystems with saline, alkaline, acidic, and arid soils. These bacteria belong to several genera such as Rhizobium, Bradyrhizobium, Azotobacter, Azospirillum, Pseudomonas and Bacillus (Tables 3 & 4 respectively). Members of these genera have developed strategies to adapt and thrive under adverse conditions [81,82]. Amongst these adaptations, alterations to the composition of the cell wall and the ability to accumulate high concentrations of soluble solutes are common. These allow for enhanced water retention and increased tolerance to osmotic and ionic stress. Cell wall composition is altered through enrichment for exopolysaccharides (EPS) and lipopolysaccharide–proteins and polysaccharide–lipids which form a protective biofilm on the root surface [83,84]. Plant growth-promoting rhizobacteria (PGPR) inoculated soils can ameliorate plant abiotic stress responses and narrated in detail in Figure 4.
Table 3: Microbial Metabolites Processes related to Plant Nutrient in Biofertilizer.
Table 4: Key microbial metabolic processes related to plant nutrition.
Soil quality indices
Soil quality indices are decision tools that effectively combine a variety of information for multi-objective decision making [73]. A number of soil quality and fertility indices have been proposed [85-88], none identifies state of soil degradation that affects its functionality. Bastida et al. [38], building on the approach of Andrews et al. [85], suggested microbiological degradation index. Scholars (Table 5) have appreciated and recommended the use of soil quality indices, reservations about their utility have also been expressed. Many a times the concepts associated with soil quality are used in close association with the concepts of sustainability, leading to a degree of confusion and inappropriate use of the term soil quality [89] Table 6. Even though the importance of evaluation of soil quality is being increasingly realized, there is yet no global consensus on how this should be defined. While the notion of soil quality includes soil fertility, soil productivity, resource sustainability and environmental quality [90-115].
Table 5: Key microbial metabolic processes related to plant nutrition.
Table 6: Ecological functions of soil (FAO, 1995) and their indicators.
Conclusion
In Nigeria and developing countries analysis of physical, chemical and biological characteristics of soil simultaneously is required to evaluate sustainability/ unsustainability of different management practices, most studies in developing countries have looked at physical and chemical characteristics only. Methodology of assessment of soil quality or soil health are still not in place for agro-ecology for crops microbiomes integrated soil nutrient management [116-132]. Biofertilizer accentuate the capacity of a soil to function by the improvement of the soil organic matter and designate cassava agro-ecology as ‘suppressive’ soils, Figure2 [133- 140].
To read more about this article...Open access Journal of of Agriculture and Soil Science
Please follow the URL to access more information about this article
To know more about our Journals...Iris Publishers
To read more about this article...Open access Journal of of Agriculture and Soil Science
Please follow the URL to access more information about this article
To know about Open Access Publishers
No comments:
Post a Comment